All functions

FreeADFun()

Free memory allocated on the C++ side by MakeADFun.

GK()

Gauss Kronrod configuration

MakeADFun()

Construct objective functions with derivatives based on a compiled C++ template.

Rinterface()

Create minimal R-code corresponding to a cpp template.

SR()

Sequential reduction configuration

TMB.Version()

Version information on API and ABI.

as.list(<sdreport>)

Convert estimates to original list format.

benchmark() plot(<parallelBenchmark>)

Benchmark parallel templates

checkConsistency()

Check consistency and Laplace accuracy

compile()

Compile a C++ template to DLL suitable for MakeADFun.

config()

Get or set internal configuration variables

confint(<tmbprofile>)

Profile based confidence intervals.

dynlib()

Add dynlib extension

gdbsource() print(<backtrace>)

Source R-script through gdb to get backtrace.

newton()

Generalized newton optimizer.

newtonOption()

Set newton options for a model object.

normalize()

Normalize process likelihood using the Laplace approximation.

oneStepPredict()

Calculate one-step-ahead (OSA) residuals for a latent variable model.

openmp()

Control number of OpenMP threads used by a TMB model.

plot(<tmbprofile>)

Plot likelihood profile.

precompile()

Precompile the TMB library in order to speed up compilation of templates.

print(<checkConsistency>)

Print output from checkConsistency

print(<sdreport>)

Print brief model summary

runExample()

Run one of the test examples.

runSymbolicAnalysis()

Run symbolic analysis on sparse Hessian

sdreport()

General sdreport function.

summary(<checkConsistency>)

Summarize output from checkConsistency

summary(<sdreport>)

summary tables of model parameters

template()

Create cpp template to get started.

tmbprofile()

Adaptive likelihood profiling.

tmbroot()

Compute likelihood profile confidence intervals of a TMB object by root-finding