All functions

A1A2A3()

The A1A2A3 Blood Group System

AA.Aa.aa()

The AA-Aa-aa Blood Group System

AB.Ab.aB.ab()

The AB-Ab-aB-ab Blood Group System

ABO()

The ABO Blood Group System

AICvlm() AICvgam() AICrrvglm() AICdrrvglm() AICqrrvglm() AICrrvgam()

Akaike's Information Criterion

AR1()

Autoregressive Process with Order-1 Family Function

AR1EIM()

Computation of the Exact EIM of an Order-1 Autoregressive Process

dAR1()

The AR-1 Autoregressive Process

BICvlm()

Bayesian Information Criterion

CM.equid() CM.free() CM.ones() CM.symm0() CM.symm1() CM.qnorm()

Constraint Matrices for Symmetry, Order, Parallelism, etc.

Coef()

Computes Model Coefficients and Quantities

Coef.qrrvglm-class

Class “Coef.qrrvglm”

Coef.qrrvglm()

Returns Important Matrices etc. of a QO Object

Coef.rrvglm-class

Class “Coef.rrvglm”

Coef.rrvglm()

Returns Important Matrices etc. of a RR-VGLM Object

Coef.vlm()

Extract Model Coefficients for VLM Objects

TypicalVGAMfamilyFunction()

Common VGAM Family Function Arguments

Huggins89table1 Huggins89.t1

Table 1 of Huggins (1989)

Influence() Influence.vglm()

Influence Function (S4 generic) of a Fitted Model

dinv.gaussian() pinv.gaussian() rinv.gaussian()

The Inverse Gaussian Distribution

KLD() KLDvglm()

Kullback-Leibler Divergence

TypicalVGAMlink()

Link functions for VGLM/VGAM/etc. families

MNSs()

The MNSs Blood Group System

Max()

Maximums

dN1binom() rN1binom()

Linear Model and Binomial Mixed Data Type Distribution

N1binomial()

Linear Model and Binomial Mixed Data Type Family Function

dN1pois() rN1pois()

Linear Model and Poisson Mixed Data Type Distribution

N1poisson()

Linear Model and Poisson Mixed Data Type Family Function

Opt()

Optimums

dpareto() ppareto() qpareto() rpareto()

The Pareto Distribution

Qvar()

Quasi-variances Preprocessing Function

R2latvar()

R-squared for Latent Variable Models

Rank() Rank.rrvglm() Rank.qrrvglm() Rank.rrvgam()

Rank

Rcim()

Mark the Baseline of Row and Column on a Matrix data

SURff()

Seemingly Unrelated Regressions Family Function

Select()

Select Variables for a Formula Response or the RHS of a Formula

SurvS4-class show,SurvS4-method

Class "SurvS4"

SurvS4() is.SurvS4()

Create a Survival Object

TIC() TICvlm()

Takeuchi's Information Criterion

Tol()

Tolerances

Trunc()

Truncated Values for the GT-Expansion Method

param.names() dimm() interleave.VGAM()

Utility Functions for the VGAM Package

V1

V1 Flying-Bombs Hits in London

V2

V2 Missile Hits in London

VGAM-package VGAM

Vector Generalized Linear and Additive Models and Other Associated Models

acat()

Ordinal Regression with Adjacent Categories Probabilities

alogitlink() lcalogitlink()

Arcsine–Logit Link Mixtures

altered() inflated() truncated() is.altered() is.deflated() is.inflated() is.truncated()

Altered, Inflated, Truncated and Deflated Values in GAITD Regression

amlbinomial()

Binomial Logistic Regression by Asymmetric Maximum Likelihood Estimation

amlexponential()

Exponential Regression by Asymmetric Maximum Likelihood Estimation

amlnormal()

Asymmetric Least Squares Quantile Regression

amlpoisson()

Poisson Regression by Asymmetric Maximum Likelihood Estimation

anova(<vglm>)

Analysis of Deviance for Vector Generalized Linear Model Fits

asinlink()

Arcsine Link Function

auuc

Auckland University Undergraduate Counts Data

aux.posbernoulli.t()

Auxiliary Function for the Positive Bernoulli Family Function with Time Effects

backPain

Data on Back Pain Prognosis, from Anderson (1984)

beggs

Bacon and Eggs Data

bell()

The Bell Series of Integers

dbenf() pbenf() qbenf() rbenf()

Benford's Distribution

benini1()

Benini Distribution Family Function

dbenini() pbenini() qbenini() rbenini()

The Benini Distribution

betaII()

Beta Distribution of the Second Kind

betaR()

The Two-parameter Beta Distribution Family Function

dbetabinom() pbetabinom() rbetabinom() dbetabinom.ab() pbetabinom.ab() rbetabinom.ab() dzoibetabinom() pzoibetabinom() rzoibetabinom() dzoibetabinom.ab() pzoibetabinom.ab() rzoibetabinom.ab()

The Beta-Binomial Distribution

betabinomial()

Beta-binomial Distribution Family Function

betabinomial.rho()

Beta-binomial Distribution Family Function (with known rho)

betabinomialff()

Beta-binomial Distribution Family Function

betaff()

The Two-parameter Beta Distribution Family Function

dbetageom() pbetageom() rbetageom()

The Beta-Geometric Distribution

betageometric()

Beta-geometric Distribution Family Function

dbetanorm() pbetanorm() qbetanorm() rbetanorm()

The Beta-Normal Distribution

betaprime()

The Beta-Prime Distribution

biamhcop()

Ali-Mikhail-Haq Distribution Family Function

dbiamhcop() pbiamhcop() rbiamhcop()

Ali-Mikhail-Haq Bivariate Distribution

biclaytoncop()

Clayton Copula (Bivariate) Family Function

dbiclaytoncop() rbiclaytoncop()

Clayton Copula (Bivariate) Distribution

bifgmcop()

Farlie-Gumbel-Morgenstern's Bivariate Distribution Family Function

dbifgmcop() pbifgmcop() rbifgmcop()

Farlie-Gumbel-Morgenstern's Bivariate Distribution

bifgmexp()

Bivariate Farlie-Gumbel-Morgenstern Exponential Distribution Family Function

bifrankcop()

Frank's Bivariate Distribution Family Function

dbifrankcop() pbifrankcop() rbifrankcop()

Frank's Bivariate Distribution

bigumbelIexp()

Gumbel's Type I Bivariate Distribution Family Function

dbilogis() pbilogis() rbilogis()

Bivariate Logistic Distribution

bilogistic()

Bivariate Logistic Distribution Family Function

binom2.or()

Bivariate Binary Regression with an Odds Ratio (Family Function)

rbinom2.or() dbinom2.or()

Bivariate Odds Ratio Model

binom2.rho() binom2.Rho()

Bivariate Probit Regression

rbinom2.rho() dbinom2.rho()

Bivariate Probit Model

binom3.or()

Trivariate Binary Regression with Three Odds Ratios (Family Function)

dbinom3.or() rbinom3.or()

Trivariate Odds Ratio Model

binomialff()

Binomial Family Function

binormal()

Bivariate Normal Distribution Family Function

dbinorm() pbinorm() rbinorm() pnorm2()

Bivariate Normal Distribution Cumulative Distribution Function

binormalcop()

Gaussian Copula (Bivariate) Family Function

dbinormcop() pbinormcop() rbinormcop()

Gaussian Copula (Bivariate) Distribution

biplackettcop()

Plackett's Bivariate Copula Family Function

dbiplackcop() pbiplackcop() rbiplackcop()

Plackett's Bivariate Copula

biplot,rrvglm-method biplot,qrrvglm-method

Biplot of Constrained Regression Models

bisa()

Birnbaum-Saunders Regression Family Function

dbisa() pbisa() qbisa() rbisa()

The Birnbaum-Saunders Distribution

bistudentt()

Bivariate Student-t Family Function

dbistudentt()

Bivariate Student-t Distribution Density Function

bmi.nz

Body Mass Index of New Zealand Adults Data

borel.tanner()

Borel-Tanner Distribution Family Function

dbort() rbort()

The Borel-Tanner Distribution

brat()

Bradley Terry Model

Brat()

Inputting Data to fit a Bradley Terry Model

bratt()

Bradley Terry Model With Ties

budworm

Western Spuce Budworm

calibrate,rrvglm-method calibrate,qrrvglm-method calibrate,rrvgam-method calibrate,Coef.qrrvglm-method

Calibration for Constrained Regression Models

calibrate()

Model Calibrations

calibrate.qrrvglm()

Calibration for CQO and CAO models

calibrate.qrrvglm.control()

Control Function for CQO/CAO Calibration

calibrate.rrvglm()

Calibration for CLO models (RR-VGLMs)

calibrate.rrvglm.control()

Control Function for CLO (RR-VGLM) Calibration

cao()

Fitting Constrained Additive Ordination (CAO)

cao.control()

Control Function for RR-VGAMs (CAO)

dcard() pcard() qcard() rcard()

Cardioid Distribution

cardioid()

Cardioid Distribution Family Function

cauchitlink()

Cauchit Link Function

cauchy() cauchy1()

Cauchy Distribution Family Function

cdf.lmscreg()

Cumulative Distribution Function for LMS Quantile Regression

cens.gumbel()

Censored Gumbel Distribution

cens.normal()

Censored Normal Distribution

cens.poisson()

Censored Poisson Family Function

cfibrosis

Cystic Fibrosis Data

cgo()

Redirects the user to cqo

chest.nz

Chest Pain in NZ Adults Data

chinese.nz

Chinese Population in New Zealand 1867–2001 Data

chisq()

Chi-squared and Chi Distributions

clo()

Redirects the User to rrvglm()

clogloglink() cloglink()

Complementary Log-log Link Function

coalminers

Breathlessness and Wheeze Amongst Coalminers Data

coefvgam()

Extract Model Coefficients of a vgam() Object

coefvlm()

Extract Model Coefficients

concoef-method concoef,cao-method concoef,Coef.cao-method concoef,rrvglm-method concoef,qrrvglm-method concoef,Coef.rrvglm-method concoef,Coef.qrrvglm-method

Constrained (Canonical) Coefficients

concoef()

Extract Model Constrained/Canonical Coefficients

confintvglm()

Confidence Intervals for Parameters of VGLMs

constraints() constraints.vlm()

Constraint Matrices

cops() copsvglm()

Centre of the Parameter Space

corbet

Corbet's Butterfly Data

cqo()

Fitting Constrained Quadratic Ordination (CQO)

crashi crashf crashtr crashmc crashbc crashp alcoff alclevels

Crashes on New Zealand Roads in 2009

cratio()

Ordinal Regression with Continuation Ratios

cumulative()

Ordinal Regression with Cumulative Probabilities

dagum()

Dagum Distribution Family Function

ddagum() pdagum() qdagum() rdagum()

The Dagum Distribution

deermice

Captures of Peromyscus maniculatus (Also Known as Deer Mice).

deplot.lmscreg()

Density Plot for LMS Quantile Regression

depvar()

Response Variable Extracted

df.residual_vlm()

Residual Degrees-of-Freedom

dgaitdplot()

Plotting the GAITD Combo Density

diffzeta()

Differenced Zeta Distribution Family Function

ddiffzeta() pdiffzeta() qdiffzeta() rdiffzeta()

Differenced Zeta Distribution

dirichlet()

Fitting a Dirichlet Distribution

dirmul.old()

Fitting a Dirichlet-Multinomial Distribution

dirmultinomial()

Fitting a Dirichlet-Multinomial Distribution

double.cens.normal()

Univariate Normal Distribution with Double Censoring

double.expbinomial()

Double Exponential Binomial Distribution Family Function

add1(<vglm>) drop1(<vglm>)

Add or Drop All Possible Single Terms to/from a Model

ducklings

Relative Frequencies of Serum Proteins in White Pekin Ducklings

eCDF.vglm()

Empirical Cumulative Distribution Function

deexp() peexp() qeexp() reexp()

Expectiles of the Exponential Distribution

denorm() penorm() qenorm() renorm()

Expectiles of the Normal Distribution

enzyme

Enzyme Data

erf() erfc()

Error Function, and variants

erlang()

Erlang Distribution

deunif() peunif() qeunif() reunif()

Expectiles of the Uniform Distribution

expexpff()

Exponentiated Exponential Distribution

expexpff1()

Exponentiated Exponential Distribution

expgeometric()

Exponential Geometric Distribution Family Function

dexpgeom() pexpgeom() qexpgeom() rexpgeom()

The Exponential Geometric Distribution

expint() expexpint() expint.E1()

The Exponential Integral and Variants

explink()

Exponential Link Function

dexplog() pexplog() qexplog() rexplog()

The Exponential Logarithmic Distribution

explogff()

Exponential Logarithmic Distribution Family Function

exponential()

Exponential Distribution

exppoisson()

Exponential Poisson Distribution Family Function

dexppois() pexppois() qexppois() rexppois()

The Exponential Poisson Distribution

dextbetabinom() pextbetabinom() qextbetabinom() rextbetabinom()

The Extended Beta-Binomial Distribution

extbetabinomial()

Extended Beta-binomial Distribution Family Function

dextlogF()

Extended log-F Distribution

extlogF1()

Extended log-F Distribution Family Function

familyname() familyname.vlm()

Family Function Name

felix()

Felix Distribution Family Function

dfelix()

The Felix Distribution

fff()

F Distribution Family Function

fill1()

Creates a Matrix of Appropriate Dimension

finney44

Toxicity trial for insects

fisherzlink()

Fisher's Z Link Function

fisk()

Fisk Distribution family function

dfisk() pfisk() qfisk() rfisk()

The Fisk Distribution

fittedvlm()

Fitted Values of a VLM object

fix.crossing.vglm()

Fixing a Quantile Regression having Crossing

flourbeetle

Mortality of Flour Beetles from Carbon Disulphide

dfoldnorm() pfoldnorm() qfoldnorm() rfoldnorm()

The Folded-Normal Distribution

foldnormal()

Folded Normal Distribution Family Function

foldsqrtlink() sqrtlink()

Square Root and Folded Square Root Link Functions

formula(<vlm>) formulavlm() term.names() term.namesvlm()

Model Formulae and Term Names for VGLMs

frechet()

Frechet Distribution Family Function

dfrechet() pfrechet() qfrechet() rfrechet()

The Frechet Distribution

freund61()

Freund's (1961) Bivariate Extension of the Exponential Distribution

dgaitdbinom() pgaitdbinom() qgaitdbinom() rgaitdbinom()

Generally Altered, Inflated, Truncated and Deflated Binomial Distribution

gaitdlog()

Generally Altered, Inflated, Truncated and Deflated Logarithmic Regression

dgaitdlog() pgaitdlog() qgaitdlog() rgaitdlog()

Generally Altered, Inflated, Truncated and Deflated Logarithmic Distribution

dgaitdnbinom() pgaitdnbinom() qgaitdnbinom() rgaitdnbinom()

Generally Altered, Inflated, Truncated and Deflated Negative Binomial Distribution

gaitdnbinomial()

Generally Altered, Inflated, Truncated and Deflated Negative Binomial Regression

dgaitdpois() pgaitdpois() qgaitdpois() rgaitdpois()

Generally Altered, Inflated, Truncated and Deflated Poisson Distribution

gaitdpoisson()

Generally Altered, Inflated, Truncated and Deflated Poisson Regression

gaitdzeta()

Generally Altered, Inflated, Truncated and Deflated Zeta Regression

dgaitdzeta() pgaitdzeta() qgaitdzeta() rgaitdzeta()

Generally Altered, Inflated and Truncated and Deflated Zeta Distribution

gamma1()

1-parameter Gamma Regression Family Function

gamma2()

2-parameter Gamma Regression Family Function

gammaR()

2-parameter Gamma Regression Family Function

gammaff.mm()

Multivariate Gamma Family Function: Mathai and Moschopoulos (1992)

gammahyperbola()

Gamma Hyperbola Bivariate Distribution

garma()

GARMA (Generalized Autoregressive Moving-Average) Models

genbetaII()

Generalized Beta Distribution of the Second Kind

dgenbetaII()

The Generalized Beta II Distribution

gengamma.stacy()

Generalized Gamma distribution family function

dgengamma.stacy() pgengamma.stacy() qgengamma.stacy() rgengamma.stacy()

Generalized Gamma Distribution

dgenpois0() pgenpois0() qgenpois0() rgenpois0()

Generalized Poisson Distribution (Original Parameterization)

dgenpois1() pgenpois1() qgenpois1() rgenpois1() dgenpois2() pgenpois2() qgenpois2() rgenpois2()

Generalized Poisson Distribution (GP-1 and GP-2 Parameterizations of the Mean)

genpoisson0()

Generalized Poisson Regression (Original Parameterization)

genpoisson1()

Generalized Poisson Regression (GP-1 Parameterization)

genpoisson2()

Generalized Poisson Regression (GP-2 Parameterization)

genrayleigh()

Generalized Rayleigh Distribution Family Function

dgenray() pgenray() qgenray() rgenray()

The Generalized Rayleigh Distribution

gensh()

Generalized Secant Hyperbolic Regression Family Function

dgensh() pgensh() qgensh() rgensh()

Generalized Secant Hyperbolic Distribution

geometric() truncgeometric()

Geometric (Truncated and Untruncated) Distributions

get.smart()

Retrieve One Component of “.smart.prediction”

get.smart.prediction()

Retrieves “.smart.prediction”

gev() gevff()

Generalized Extreme Value Regression Family Function

dgev() pgev() qgev() rgev()

The Generalized Extreme Value Distribution

gew

General Electric and Westinghouse Data

goffset()

GAITD Offset for the GTE Method

gompertz()

Gompertz Regression Family Function

dgompertz() pgompertz() qgompertz() rgompertz()

Gompertz Distribution

gpd()

Generalized Pareto Distribution Regression Family Function

dgpd() pgpd() qgpd() rgpd()

The Generalized Pareto Distribution

grain.us

Grain Prices Data in USA

grc() rcim()

Row-Column Interaction Models including Goodman's RC Association Model and Unconstrained Quadratic Ordination

gumbel() gumbelff()

Gumbel Regression Family Function

gumbelII()

Gumbel-II Regression Family Function

dgumbelII() pgumbelII() qgumbelII() rgumbelII()

The Gumbel-II Distribution

dgumbel() pgumbel() qgumbel() rgumbel()

The Gumbel Distribution

guplot() guplot.default() guplot.vlm()

Gumbel Plot

has.intercept() has.interceptvlm()

Has a Fitted VGLM Got an Intercept Term?

hatvalues() hatvaluesvlm() hatplot() hatplot.vlm() dfbetavlm()

Hat Values and Regression Deletion Diagnostics

hdeff() hdeff.vglm() hdeff.numeric() hdeff.matrix()

Hauck-Donner Effects: A Detection Test for Wald Tests

hdeffsev()

Hauck-Donner Effect: Severity Measures

hdeffsev0() hdeffsev2()

Hauck-Donner Effect: Severity Measures

hormone

Hormone Assay Data

hspider

Hunting Spider Data

huber1() huber2()

Huber's Least Favourable Distribution Family Function

dhuber() edhuber() rhuber() qhuber() phuber()

Huber's Least Favourable Distribution

hunua

Hunua Ranges Data

hurea()

Husler-Reiss Angular Surface Distribution Family Function

dhurea()

The Husler-Reiss Angular Surface Distribution

hyperg()

Hypergeometric Family Function

hypersecant() hypersecant01()

Hyperbolic Secant Regression Family Function

hzeta()

Haight's Zeta Family Function

dhzeta() phzeta() qhzeta() rhzeta()

Haight's Zeta Distribution

iam()

Index from Array to Matrix

identitylink() negidentitylink()

Identity Link Function

inv.binomial()

Inverse Binomial Distribution Family Function

inv.gaussianff()

Inverse Gaussian Distribution Family Function

inv.lomax()

Inverse Lomax Distribution Family Function

dinv.lomax() pinv.lomax() qinv.lomax() rinv.lomax()

The Inverse Lomax Distribution

inv.paralogistic()

Inverse Paralogistic Distribution Family Function

dinv.paralogistic() pinv.paralogistic() qinv.paralogistic() rinv.paralogistic()

The Inverse Paralogistic Distribution

is.buggy() is.buggy.vlm()

Does the Fitted Object Suffer from a Known Bug?

is.crossing.vglm()

Quantile Crossing Detection

is.parallel.matrix() is.parallel.vglm()

Parallelism Constraint Matrices

is.smart()

Test For a Smart Object

is.zero.matrix() is.zero.vglm()

Zero Constraint Matrices

kendall.tau()

Kendall's Tau Statistic

kumar()

Kumaraswamy Regression Family Function

dkumar() pkumar() qkumar() rkumar()

The Kumaraswamy Distribution

lakeO

Annual catches on Lake Otamangakau from October 1974 to October 1989

lambertW()

The Lambert W Function

laplace()

Laplace Regression Family Function

dlaplace() plaplace() qlaplace() rlaplace()

The Laplace Distribution

latvar() lv()

Latent Variables

leipnik()

Leipnik Regression Family Function

lerch()

Lerch Phi Function

leukemia

Acute Myelogenous Leukemia Survival Data

levy()

Levy Distribution Family Function

dlgamma() plgamma() qlgamma() rlgamma()

The Log-Gamma Distribution

lgamma1() lgamma3()

Log-gamma Distribution Family Function

dlind() plind() rlind()

The Lindley Distribution

lindley()

1-parameter Lindley Distribution

linkfun() linkfunvlm()

Link Functions for VGLMs

lino()

Generalized Beta Distribution Family Function

dlino() plino() qlino() rlino()

The Generalized Beta Distribution (Libby and Novick, 1982)

lirat

Low-iron Rat Teratology Data

lms.bcg()

LMS Quantile Regression with a Box-Cox transformation to a Gamma Distribution

lms.bcn()

LMS Quantile Regression with a Box-Cox Transformation to Normality

lms.yjn() lms.yjn2()

LMS Quantile Regression with a Yeo-Johnson Transformation to Normality

log1mexp() log1pexp()

Logarithms with an Unit Offset and Exponential Term

logF()

Natural Exponential Family Generalized Hyperbolic Secant Distribution Family Function

dlogF()

log F Distribution

logLik(<vlm>)

Extract Log-likelihood for VGLMs/VGAMs/etc.

dlog() plog() qlog() rlog()

Logarithmic Distribution

logclink()

Complementary-log Link Function

logff()

Logarithmic Distribution

logistic1() logistic()

Logistic Distribution Family Function

logitlink() extlogitlink()

Logit Link Function

logitoffsetlink()

Logit-with-an-Offset Link Function

loglinb2()

Loglinear Model for Two Binary Responses

loglinb3()

Loglinear Model for Three Binary Responses

loglink() negloglink() logneglink()

Log Link Function, and Variants

logloglink() loglogloglink()

Log-log and Log-log-log Link Functions

lognormal()

Lognormal Distribution

logofflink() log1plink()

Log Link Function with an Offset

lomax()

Lomax Distribution Family Function

dlomax() plomax() qlomax() rlomax()

The Lomax Distribution

lpossums

Leadbeater's Possums

lqnorm()

Minimizing the L-q norm Family Function

lrt.stat() lrt.stat.vlm()

Likelihood Ratio Test Statistics Evaluated at the Null Values

lrtest() lrtest_vglm()

Likelihood Ratio Test of Nested Models

lvplot()

Latent Variable Plot

lvplot.qrrvglm()

Latent Variable Plot for QO models

lvplot.rrvglm()

Latent Variable Plot for RR-VGLMs

machinists

Machinists Accidents

makeham()

Makeham Regression Family Function

dmakeham() pmakeham() qmakeham() rmakeham()

The Makeham Distribution

margeff()

Marginal Effects for Several Categorical Response Models

marital.nz

New Zealand Marital Data

maxwell()

Maxwell Regression Family Function

dmaxwell() pmaxwell() qmaxwell() rmaxwell()

The Maxwell Distribution

mccullagh89()

McCullagh (1989) Distribution Family Function

meangaitd()

Mean of the GAITD Combo Density

melbmaxtemp

Melbourne Daily Maximum Temperatures

meplot() meplot.default() meplot.vlm()

Mean Excess Plot

micmen()

Michaelis-Menten Model

mills.ratio() mills.ratio2()

Mills Ratio

mix2exp()

Mixture of Two Exponential Distributions

mix2normal()

Mixture of Two Univariate Normal Distributions

mix2poisson()

Mixture of Two Poisson Distributions

model.framevlm()

Construct the Model Frame of a VLM Object

model.matrixqrrvglm()

Construct the Model Matrix of a QRR-VGLM Object

model.matrixvlm()

Construct the Design Matrix of a VLM Object

moffset()

Matrix Offset

multilogitlink()

Multi-logit Link Function

multinomial()

Multinomial Logit Model

nakagami()

Nakagami Regression Family Function

dnaka() pnaka() qnaka() rnaka()

Nakagami Distribution

nbcanlink()

Negative Binomial Canonical Link Function

negbinomial() polya() polyaR()

Negative Binomial Distribution Family Function

negbinomial.size()

Negative Binomial Distribution Family Function With Known Size

niters() niters.vlm()

Number of Iterations

normal.vcm()

Univariate Normal Distribution as a Varying-Coefficient Model

nparam() nparam.vlm() nparam.vgam() nparam.rrvglm() nparam.drrvglm() nparam.qrrvglm() nparam.rrvgam()

Number of Parameters

olym08 olym12

2008 and 2012 Summer Olympic Final Medal Count Data

ordpoisson()

Ordinal Poisson Family Function

ordsup() ordsup.vglm()

Ordinal Superiority Measures

oxtemp

Oxford Temperature Data

paralogistic()

Paralogistic Distribution Family Function

dparalogistic() pparalogistic() qparalogistic() rparalogistic()

The Paralogistic Distribution

paretoIV() paretoIII() paretoII()

Pareto(IV/III/II) Distribution Family Functions

dparetoIV() pparetoIV() qparetoIV() rparetoIV() dparetoIII() pparetoIII() qparetoIII() rparetoIII() dparetoII() pparetoII() qparetoII() rparetoII() dparetoI() pparetoI() qparetoI() rparetoI()

The Pareto(IV/III/II) Distributions

paretoff() truncpareto()

Pareto and Truncated Pareto Distribution Family Functions

perks()

Perks Distribution Family Function

dperks() pperks() qperks() rperks()

The Perks Distribution

perspqrrvglm()

Perspective plot for QRR-VGLMs

pgamma.deriv()

Derivatives of the Incomplete Gamma Integral

pgamma.deriv.unscaled()

Derivatives of the Incomplete Gamma Integral (Unscaled Version)

plotdeplot.lmscreg()

Density Plot for LMS Quantile Regression

plotdgaitd() plotdgaitd.vglm()

Plotting the GAITD Combo Density from a GAITD Regression Object

plotqrrvglm()

Model Diagnostic Plots for QRR-VGLMs

plotqtplot.lmscreg()

Quantile Plot for LMS Quantile Regression

plotrcim0()

Main Effects Plot for a Row-Column Interaction Model (RCIM)

plotvgam()

Default VGAM Plotting

plotvgam.control()

Control Function for plotvgam()

plotvglm()

Plots for VGLMs

pneumo

Pneumoconiosis in Coalminers Data

poisson.points()

Poisson-points-on-a-plane/volume Distances Distribution

dpois.points()

Poisson Points Distribution

poissonff()

Poisson Regression

dpolono() ppolono() rpolono()

The Poisson Lognormal Distribution

rposbern() dposbern()

Positive Bernoulli Sequence Model

posbernoulli.b()

Positive Bernoulli Family Function with Behavioural Effects

posbernoulli.t()

Positive Bernoulli Family Function with Time Effects

posbernoulli.tb()

Positive Bernoulli Family Function with Time and Behavioural Effects

posbinomial()

Positive Binomial Distribution Family Function

dposgeom() pposgeom() qposgeom() rposgeom()

Positive-Geometric Distribution

posnegbinomial()

Positive Negative Binomial Distribution Family Function

dposnorm() pposnorm() qposnorm() rposnorm()

The Positive-Normal Distribution

posnormal()

Positive Normal Distribution Family Function

pospoisson()

Positive Poisson Distribution Family Function

powerlink()

Power Link Function

prats

Pregnant Rats Toxological Experiment Data

predictqrrvglm()

Predict Method for a CQO fit

predictvglm()

Predict Method for a VGLM fit

prentice74()

Prentice (1974) Log-gamma Distribution

prinia

Yellow-bellied Prinia

probitlink()

Probit Link Function

profilevglm()

Method for Profiling vglm Objects

propodds()

Proportional Odds Model for Ordinal Regression

prplot() prplot.control()

Probability Plots for Categorical Data Analysis

put.smart()

Adds a List to the End of the List “.smart.prediction”

qrrvglm.control()

Control Function for QRR-VGLMs (CQO)

qtplot.gumbel()

Quantile Plot for Gumbel Regression

qtplot.lmscreg()

Quantile Plot for LMS Quantile Regression

qvar()

Quasi-variances Extraction Function

rayleigh() cens.rayleigh()

Rayleigh Regression Family Function

drayleigh() prayleigh() qrayleigh() rrayleigh()

Rayleigh Distribution

rcqo()

Constrained Quadratic Ordination

rdiric()

The Dirichlet distribution

rec.exp1()

Upper Record Values from a 1-parameter Exponential Distribution

rec.normal()

Upper Record Values from a Univariate Normal Distribution

reciprocallink() negreciprocallink()

Reciprocal Link Function

residualsvglm()

Residuals for a VGLM fit

rhobitlink()

Rhobit Link Function

drice() price() qrice() rrice()

The Rice Distribution

riceff()

Rice Distribution Family Function

rigff()

Reciprocal Inverse Gaussian distribution

rlplot.gevff()

Return Level Plot for GEV Fits

rootogram4() rootogram4vglm()

Rootograms (S4 generic) for Assessing Goodness of Fit of Probability Models

round2()

Rounding of Numbers to Base 2

rrar()

Nested Reduced-rank Autoregressive Models for Multiple Time Series

rrvglm-class

Class “rrvglm”

rrvglm()

Fitting Reduced-Rank Vector Generalized Linear Models (RR-VGLMs) and Doubly Constrained RR-VGLMs (DRR-VGLMs)

rrvglm.control()

Control Function for rrvglm()

rrvglm.optim.control()

Control Function for rrvglm() Calling optim()

ruge

Rutherford-Geiger Polonium Data

s()

Defining Smooths in VGAM Formulas

sc.studentt2()

Scaled Student t Distribution with 2 df Family Function

dsc.t2() psc.t2() qsc.t2() rsc.t2()

Expectiles/Quantiles of the Scaled Student t Distribution with 2 Df

score.stat() score.stat.vlm()

Rao's Score Test Statistics Evaluated at the Null Values

seglines()

Hauck-Donner Effects: Segmented Lines Plot

seq2binomial()

The Two-stage Sequential Binomial Distribution Family Function

setup.smart()

Smart Prediction Setup

simplex()

Simplex Distribution Family Function

dsimplex() rsimplex()

Simplex Distribution

simulate(<vlm>)

Simulate Responses for VGLMs and VGAMs

sinmad()

Singh-Maddala Distribution Family Function

dsinmad() psinmad() qsinmad() rsinmad()

The Singh-Maddala Distribution

skellam()

Skellam Distribution Family Function

dskellam() rskellam()

The Skellam Distribution

dskewnorm() rskewnorm()

Skew-Normal Distribution

skewnormal()

Univariate Skew-Normal Distribution Family Function

slash()

Slash Distribution Family Function

dslash() pslash() rslash()

Slash Distribution

sloglink() lcsloglink()

Square root–Log Link Mixtures

sm.os()

Defining O'Sullivan Spline Smooths in VGAM Formulas

sm.ps()

Defining Penalized Spline Smooths in VGAM Formulas

smart.expression

S Expression for Smart Functions

smart.mode.is()

Determine What Mode the Smart Prediction is In

sm.bs() sm.ns() sm.poly() sm.scale()

Smart Prediction

specials() specialsvglm()

Special Values or Quantities in a Fitted Object

spikeplot()

Spike Plot

sratio()

Ordinal Regression with Stopping Ratios

step4() step4vglm()

Choose a model by AIC in a Stepwise Algorithm

studentt() studentt2() studentt3()

Student t Distribution

summary(<drrvglm>) show(<summary.drrvglm>) summary(<rrvglm>) show(<summary.rrvglm>)

Summarizing Reduced Rank Vector Generalized Linear Model (RR-VGLM) and Doubly constrained RR-VGLM Fits

summarypvgam() show(<summary.pvgam>)

Summarizing Penalized Vector Generalized Additive Model Fits

summaryvgam() show(<summary.vgam>)

Summarizing Vector Generalized Additive Model Fits

summaryvglm() show(<summary.vglm>)

Summarizing Vector Generalized Linear Model Fits

tobit()

Tobit Regression

dtobit() ptobit() qtobit() rtobit()

The Tobit Distribution

topple()

Topp-Leone Distribution Family Function

dtopple() ptopple() qtopple() rtopple()

The Topp-Leone Distribution

toxop

Toxoplasmosis Data

dtriangle() ptriangle() qtriangle() rtriangle()

The Triangle Distribution

trim.constraints()

Trimmed Constraint Matrices

trinormal()

Trivariate Normal Distribution Family Function

dtrinorm() rtrinorm()

Trivariate Normal Distribution Density and Random Variates

trplot()

Trajectory Plot

trplot.qrrvglm()

Trajectory plot for QRR-VGLMs

dtruncpareto() ptruncpareto() qtruncpareto() rtruncpareto()

The Truncated Pareto Distribution

truncweibull()

Truncated Weibull Distribution Family Function

ucberk

University California Berkeley Graduate Admissions

uninormal()

Univariate Normal Distribution

vcovvlm() vcovrrvglm() vcovdrrvglm() vcovqrrvglm()

Calculate Variance-Covariance Matrix for a Fitted VLM or RR-VGLM or DRR-VGLM or QRR-VGLM Object

venice venice90

Venice Maximum Sea Levels Data

vgam-class

Class “vgam”

vgam()

Fitting Vector Generalized Additive Models

vgam.control()

Control Function for vgam()

vglm-class

Class “vglm”

vglm()

Fitting Vector Generalized Linear Models

vglm.control()

Control Function for vglm()

vglmff-class

Class “vglmff”

vonmises()

von Mises Distribution Family Function

vplot.profile() vpairs.profile()

Plotting Functions for 'profile' Objects

vsmooth.spline()

Vector Cubic Smoothing Spline

waitakere

Waitakere Ranges Data

wald.stat() wald.stat.vlm()

Wald Test Statistics Evaluated at the Null Values

waldff()

Wald Distribution Family Function

weibull.mean()

Weibull Distribution Family Function, Parameterized by the Mean

weibullR()

Weibull Distribution Family Function

weightsvglm()

Prior and Working Weights of a VGLM fit

wine

Bitterness in Wine Data

wrapup.smart()

Cleans Up After Smart Prediction

wsdm()

The WSDM Function

yeo.johnson()

Yeo-Johnson Transformation

yulesimon()

Yule-Simon Family Function

dyules() pyules() qyules() ryules()

Yule-Simon Distribution

dzabinom() pzabinom() qzabinom() rzabinom()

Zero-Altered Binomial Distribution

zabinomial() zabinomialff()

Zero-Altered Binomial Distribution

dzageom() pzageom() qzageom() rzageom()

Zero-Altered Geometric Distribution

zageometric() zageometricff()

Zero-Altered Geometric Distribution

dzanegbin() pzanegbin() qzanegbin() rzanegbin()

Zero-Altered Negative Binomial Distribution

zanegbinomial() zanegbinomialff()

Zero-Altered Negative Binomial Distribution

dzapois() pzapois() qzapois() rzapois()

Zero-Altered Poisson Distribution

zapoisson() zapoissonff()

Zero-Altered Poisson Distribution

zero

The zero Argument in VGAM Family Functions

zeta()

Riemann's (and the Hurwitz) Zeta Function, With Derivatives

dzeta() pzeta() qzeta() rzeta()

The Zeta Distribution

zetaff()

Zeta Distribution Family Function

dzibinom() pzibinom() qzibinom() rzibinom()

Zero-Inflated Binomial Distribution

zibinomial() zibinomialff()

Zero-Inflated Binomial Distribution Family Function

dzigeom() pzigeom() qzigeom() rzigeom()

Zero-Inflated Geometric Distribution

zigeometric() zigeometricff()

Zero-Inflated Geometric Distribution Family Function

dzinegbin() pzinegbin() qzinegbin() rzinegbin()

Zero-Inflated Negative Binomial Distribution

zinegbinomial() zinegbinomialff()

Zero-Inflated Negative Binomial Distribution Family Function

zipebcom()

Exchangeable Bivariate cloglog Odds-ratio Model From a Zero-inflated Poisson Distribution

zipf()

Zipf Distribution Family Function

dzipf() pzipf() qzipf() rzipf()

The Zipf Distribution

dzipfmb() pzipfmb() qzipfmb() rzipfmb()

The Zipf-Mandelbrot Distribution

dzipois() pzipois() qzipois() rzipois()

Zero-Inflated Poisson Distribution

zipoisson() zipoissonff()

Zero-Inflated Poisson Distribution Family Function

zoabetaR()

Zero- and One-Inflated Beta Distribution Family Function

dzoabeta() pzoabeta() qzoabeta() rzoabeta()

The Zero/One-Inflated Beta Distribution