admiralmetabolic

Metabolism extension package for ADaM in R Asset Library admiral

Purpose

To provide a complementary (to admiral) toolbox that enables users to develop specifics for metabolic clinical trials.

Installation

To install the latest development version of the package directly from GitHub use the following code:

if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes")
}

remotes::install_github("pharmaverse/admiraldev") # This is a required dependency of {admiralmetabolic}
remotes::install_github("pharmaverse/admiral") # This is a required dependency of {admiralmetabolic}
remotes::install_github("pharmaverse/admiralmetabolic")

Dependencies

The latest version of the package works with the latest versions of the packages stated in DESCRIPTION.

If a previous version of the package should be used, it is recommended to use latest version of the dependencies at the point of time when the previous version of admiralmetabolic was released.

Scope

  • Build a toolbox of re-usable functions and utilities to create metabolism-specific ADaM datasets in R in a modular manner.
  • All functions are created based upon the ADaM Implementation Guide and aim to facilitate the programming of ADaM dataset standards.
  • Initially the package will focus on .

Expectations

admiralmetabolic is expected to complement admiral and provide functions to help with the creation of analyses required for metabolic trial ADaMs.

References and Documentation

R Versions

Here’s a summary of our strategy for this package related to R versions:

  • R versions for developers and users will follow the same as admiral core package.
  • For development the main branch of admiral core is used as a dependency. For releasing a new admiralmetabolic version it must run using the latest released admiral core version.

Contact

We use the following for support and communications between user and developer community:

  • Slack - for informal discussions, Q&A and building our user community. If you don’t have access, use this link to join the pharmaverse Slack workspace
  • GitHub Issues - for direct feedback, enhancement requests or raising bugs