Changelog

Source: NEWS.md

aplot 0.2.62025-06-12

• add citation information (2025-06-12, Thu)
  • https://doi.org/10.1016/j.xinn.2025.100958

aplot 0.2.52025-02-27

• support main plot with coord_fixed() (2025-02-19, Wed, #45)

aplot 0.2.42024-12-17

• update DESCRIPTION to add citation (2024-12-17, Tue)
  • G Yu (2018) doi:10.1093/molbev/msy194

aplot 0.2.32024-06-17

• xlab2() and ylab2() to prevent axis label aignment (2024-06-17, Mon)

aplot 0.2.22023-10-06

• bug fixed in plot expand adjustment (2023-10-06, Fri, #36)
• introduce .process_plotlist() for internally process plotlist (2023-09-16, Sat)

aplot 0.2.12023-09-15

• compatible with ‘enrichplotDot’ object in ‘enrichplot’ v >= 1.20.2 to override point shape legend supported in ‘ggfun’ v >= 0.1.3 (2023-09-15, Fri)

aplot 0.2.02023-08-09

• control space between subplots (2023-07-15, Sat, #31)
• gglistGrob() to convert a ‘gglist’ object to a ‘gtable’ object (2023-06-26, Mon)
• <= to add ggplot component to each of the plots stored in a “gglist” object (2023-06-26, Mon)
• mv theme_no_margin() to the ‘ggfun’ package (2023-06-24, Sat)
• extend ggsave() to support gglist object (2023-06-05, Mon, #26)

aplot 0.1.102023-03-08

• fixed R check for a typo in grid.draw.aplot() method (2023-03-08, Wed)

aplot 0.1.92022-11-23

• use ggfun::theme_noxaxis() instead of ggtree::theme_dendrogram() (2022-11-21, Mon)
• use original scale when sub plot is not a ‘ggtree’ object (2022-11-18, Fri, #23)

aplot 0.1.82022-10-09

• user can use options(aplot_align = "y") to pass the value to as.patchwork(align="y") (2022-10-09, Sun)
  • https://github.com/YuLab-SMU/ChIPseeker/pull/199#pullrequestreview-1135289398

aplot 0.1.72022-09-06

• [, [<-, [[ and [[<- methods for the ‘aplot’ class (2022-08-27, Sat, #22)
• introduce align parameter in as.patchwork() (2022-07-27, Wed, #19)

aplot 0.1.62022-06-03

• bug fixed

aplot 0.1.52022-06-01

• output parameter in plot_list() can specify to return a gglist or patchwork object (2022-06-01, Wed)
• plot_list() calls gglist() and return a gglist object (2022-05-05, Thu)

aplot 0.1.42022-05-05

• gglist() function to construct composite plot (2022-05-05, Thu)
• based on the update of ggrange(), now in xlim2() and ylim2(), we should specify region = 'plot' (2022-04-06, Wed)
• mv ggrange(), xrange() and yrange() to ‘ggfun’ (2022-04-01, Fri)

aplot 0.1.32022-04-01

• update ggrange() to support extracting plot limit and range (newly added) (2022-04-01, Fri)

aplot 0.1.22022-01-10

• bug fixed in setting plot.tag theme element in plot_list (2021-11-08, Mon)

aplot 0.1.12021-09-22

• add labels parameter in plot_list (2021-09-19, Sun)
• plot_list use ggfun::facet_set() to use facet label to label subplots (2021-09-17, Fri)
• options(aplot_guides = "keep") to set whether collecting guides (2021-09-16, Thu)
  • https://github.com/YuLab-SMU/aplot/issues/6#issuecomment-920606540
• mv ggbreak2ggplot, is.ggbreak and is.ggtree to the ggfun package and import ggfun
• plot_list now compatible with ggbreak object (2021-09-07, Tue)
• print(aplot) will draw the figure and return a patchwork object (2021-09-03, Fri; #6)

aplot 0.1.02021-09-03

• add byrow, guides and design parameter in plot_list (2021-09-03, Fri)

aplot 0.0.9

• bug fixed for plot_list with patchwork object (2021-09-03, Fri)
• plot_list supports named plots as input and uses the names as facet labels of the plots

aplot 0.0.8

• update ..., tag_levels and tag_size parameters in plot_list (2021-09-02, Thu)

aplot 0.0.72021-09-01

• suggest ggfun (2021-08-27, Mon)

aplot 0.0.62020-09-03

• is.ggtree from treeio package (2020-08-31, Mon)
• compatible to work with coord_flip plot (2020-08-30, Sun)
• fixed typo (2020-07-24, Fri)

aplot 0.0.52020-07-22

• remove margin in all plots (2020-07-22, Wed)
• bug fixed of using insert_* with scale_*_discret(limits=""). (2020-07-03, Fri)
  • https://github.com/YuLab-SMU/aplot/issues/2
  • https://github.com/YuLab-SMU/aplot/pull/3
• use ggplot() + theme_void() instead of patchwork::plot_spacer() for empty plot (2020-04-15, Wed)

aplot 0.0.42020-04-07

• export xrange and yrange (2020-04-07, Tue)
• plot_list (2020-03-31, Tue)

aplot 0.0.32020-03-30

• CRAN release
  • xlim2()
  • ylim2()
  • insert_left()
  • insert_right()
  • insert_top()
  • insert_bottom()
  • user can use ggsave to export the aplot object to a figure (e.g. png, pdf)