Determine the number a Node has after conversion to a phylo object

Use this function when plotting a Node as a phylo, e.g. to set custom labels to plot.

GetPhyloNr(x, type = c("node", "edge"))

Arguments

x

The Node

type

Either "node" (the default) or "edge" (to get the number of the edge from x to its parent)

Value

an integer representing the node

See also

Other ape phylo conversions: as.Node.phylo(), as.phylo.Node()

Examples

library(ape)
library(data.tree)
data(acme)
ap <- as.phylo(acme)
#plot(ap)
#nodelabels("IT Dep.", GetPhyloNr(Climb(acme, "IT")))
#edgelabels("Good!", GetPhyloNr(Climb(acme, "IT", "Switch to R"), "edge"))