Convert a dendrogram to a data.tree Node

Source: R/node_conversion_dendrogram.R

Convert a dendrogram to a data.tree Node

# S3 method for class 'dendrogram'
as.Node(
  x,
  name = "Root",
  heightName = "plotHeight",
  check = c("check", "no-warn", "no-check"),
  ...
)

Arguments

x

The dendrogram

name

The name of the root Node

heightName

The name under which the dendrogram's height is stored

check

Either

  • "check": if the name conformance should be checked and warnings should be printed in case of non-conformance (the default)

  • "no-warn": if the name conformance should be checked, but no warnings should be printed in case of non-conformance (if you expect non-conformance)

  • "no-check" or FALSE: if the name conformance should not be checked; use this if performance is critical. However, in case of non-conformance, expect cryptic follow-up errors

...

Additional parameters

Value

The root Node of a data.tree

See also

Other as.Node: as.Node.data.frame(), as.Node.list(), as.Node.phylo(), as.Node.rpart(), as.Node()

Examples

hc <- hclust(dist(USArrests), "ave")
dend1 <- as.dendrogram(hc)
tree1 <- as.Node(dend1)
tree1$attributesAll
#> [1] "members"    "midpoint"   "plotHeight" "leaf"       "value"     
tree1$totalCount
#> [1] 99
tree1$leafCount
#> [1] 50
tree1$height
#> [1] 10