Fixed a mistake in per2cov(), leading to wrong assignments in specific cases
goeveg 0.7.52024-05-17
Added argument to define number of decimal places in ‘syntable()’-results
Empty cell values are transformed to 0 in ‘clean_matrix()’
Fixed ‘clean_matrix()’ to work correctly with non-numeric values in data tables
goeveg 0.7.42024-02-26
Added option to transform with individual scales per sample in ‘cov2per’ and ‘per2cov’
Added descriptions and option ‘rmchar’ to ‘trans_matrix()’
goeveg 0.7.3
Added function ‘clean_matrix()’ to remove species without occurrences (frequency = 0) and samples without species from a species matrix in one simple step
Added function ‘trans_matrix()’ to transpose a species matrix, while preserving correct species and sample names.
Simplified function ‘merge_taxa()’ to make it work much faster.
Added option ‘backtransform’ to decide whether cover-abundance values should be kept as percentage cover or back-transformed into original cover-abundance values
Option ‘drop_zero’ renamed to ‘clean_matrix’ and set on FALSE by default
Fixed an error in ‘cov2per’ when providing a data frame with only one column as community data
Fixed an unnecessary warning message in ‘syntable’ occurring at cover value transformation
goeveg 0.7.22024-02-06
Added cover abundance scale “niwap” from Lower Saxony species survey programmes (Schacherer 2001)
Added ‘x’-value to presence/absence scale
‘merge_taxa()’:
returns names of merged taxa only once (not for each relevé)
added option ‘drop_zero’ to decide whether species without occurrences or empty samples should be removed or kept
fixed an error when providing individual scales for each sample
‘syntable()’ and ‘merge_taxa()’ automatically repair imported tables with empty character values ("")
goeveg 0.7.12023-12-13
‘syntable()’ can now handle factorial variables for defining clusters, e.g. to summarize relevés according to pre-defined categories and is more flexible regarding the format of the community matrix
Terminology was harmonized between different functions
goeveg 0.7.0
New functions added:
‘merge_taxa()’ for merging taxa/species with identical names
‘cov2per()’ and ‘per2cov()’ for conversion between cover-abundance codes and percentage cover
‘dimcheckMDS()’ is renamed into ‘screeplot_NMDS()’ with enhanced description and progress bar
goeveg 0.6.52023-06-13
Fixed wrong species labeling in ‘racurve()’ when ‘freq = TRUE’
goeveg 0.6.42023-05-16
Added functions ‘deg2rad()’ and ‘rad2deg()’ for conversion between radians and degrees
Updated data table ‘schedenenv’
goeveg 0.6.3
Fixed wrong p-value calculation for GLMs in ‘specresponse()’
Fixed problem with NAs in ‘specresponse()’ when showing point values
goeveg 0.6.2
Added na.action argument to ‘specresponse()’
goeveg 0.6.12023-05-04
Explained deviances and p-values are now printed in ‘specresponse()’. Full model results are returned in an (invisible) object.
Added functionality to select the least abundant (rarest) species in ‘ordiselect()’
goeveg 0.6.02023-04-19
(Re-)added functions for calculation and sorting of synoptic tables: ‘syntable()’ and ‘synsort()’
Comprehensive update for ‘ordiselect()’. Now returns exact proportion of selected species. Correction in selection to axis fit limits. Variable fit now only works with factor centroids.
Updated help pages
goeveg 0.5.12021-05-10
Fixes in references and value tags
goeveg 0.5.0
Removal of functions ‘synsort()’ and ‘syntable()’ due to unsolved incompatibilities
goeveg 0.4.4
Added lwd argument for ‘specresponse()’
goeveg 0.4.3
Added xlim & ylim arguments for ‘racurve()’
Added na.rm argument for ‘ordiselect()’
goeveg 0.4.22018-11-22
Small fixes, fixed package dependencies
Spell checking
goeveg 0.4.1
Added new functions for calculation and sorting of synoptic tables: ‘syntable()’ and ‘synsort()’
goeveg 0.3.32017-01-25
Fixes in documentation
goeveg 0.3.2
Merged ‘specresponses()’/‘specresponse()’ into one single function ‘specresponse()’
Better selection method of polynomial GLMs and GAMs in ‘specresponse()’
goeveg 0.3.1
Fixed use of external functions (‘gam()’, ‘rdist()’)
Max. of 3 polynomials in automatic GLM selection of ‘specresponse()’
goeveg 0.3.02016-12-14
Fixed and renewed function ‘specresponse()’/‘specresponses()’: now works also with NMDS, includes zero values and is based on presence/absence data (logistic regression). Instead of cubic smoothing splines the function now uses GLMs/GAMs.
goeveg 0.2.02016-06-21
Added functionality to use frequencies in ‘racurve()’
Added functionality to label species in ‘racurve()’