mod.matrix() was renamed to modularity_matrix() to create a more
consistent API.
mod.matrix(graph, membership, weights = NULL, resolution = 1, directed = TRUE)Numeric vector, one value for each vertex, the membership vector of the community structure.
If not NULL then a numeric vector giving edge weights.
The resolution parameter. Must be greater than or equal to 0. Set it to 1 to use the classical definition of modularity.
Whether to use the directed or undirected version of modularity. Ignored for undirected graphs.