All functions

align.pedigree()

Generate plotting information for a pedigree

as.data.frame(<pedigree>)

data.frame from a pedigree object

autohint()

Align a pedigree to print well

bitSize()

Calculate pedigree bitsize, defined as 2 * # NonFounders - # Founders

familycheck()

Error check for a family classification

findAvailAffected()

Find a single person to trim from a pedigree whose is available

findAvailNonInform()

Find subjects from a pedigree who are available and uninformative

findUnavailable() pedigree.trim()

Find or trim unavailable subjects in a pedigree

fixParents()

Fix details on the parents for children of the pedigree

ibdMatrix()

Create an IBD matrix

kindepth()

Compute the depth of each subject in a pedigree

kinship()

Compute a kinship matrix

kinship2

The kinship2 package for pedigree data

legendPlot()

Legend Pedigree Plot

makefamid()

Construct a family id from pedigree information

makekinship()

Create a sparse kinship matrix

minnbreast

Minnesota Breast Cancer Study

pedigree() `[`(<pedigreeList>) `[`(<pedigree>) print(<pedigree>) print(<pedigreeList>)

Create a pedigree or pedigreeList object

pedigree.legend()

plot a legend for a pedigree

pedigree.shrink() print(<pedigree.shrink>)

Shrink pedigree object

pedigree.unrelated()

Determine set of maximum number of unrelated available subjects from a pedigree

plot(<pedigree>)

plot pedigrees

plot(<pedigree.shrink>)

plot pedigree.shrink object that is a shrunk pedigree object

sample.ped

Two example pedigrees

testped1

testped1