example.R

Execution end time

2025-06-30T19:42:54 Coordinated Universal Time

Path to script

/tmp/RtmpjLQZ6D/filec5cd0545871aa/example.R

Summary

success

Script

Setup

library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

library(ggplot2)

Prepare data

x <- mtcars |>
  as_tibble(rownames = "car")

print(x)

[38;5;246m# A tibble: 32 × 12[39m
   car           mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb
   [3m[38;5;246m<chr>[39m[23m       [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m
[38;5;250m 1[39m Mazda RX4    21       6  160    110  3.9   2.62  16.5     0     1     4     4
[38;5;250m 2[39m Mazda RX4 …  21       6  160    110  3.9   2.88  17.0     0     1     4     4
[38;5;250m 3[39m Datsun 710   22.8     4  108     93  3.85  2.32  18.6     1     1     4     1
[38;5;250m 4[39m Hornet 4 D…  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1
[38;5;250m 5[39m Hornet Spo…  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2
[38;5;250m 6[39m Valiant      18.1     6  225    105  2.76  3.46  20.2     1     0     3     1
[38;5;250m 7[39m Duster 360   14.3     8  360    245  3.21  3.57  15.8     0     0     3     4
[38;5;250m 8[39m Merc 240D    24.4     4  147.    62  3.69  3.19  20       1     0     4     2
[38;5;250m 9[39m Merc 230     22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2
[38;5;250m10[39m Merc 280     19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4
[38;5;246m# ℹ 22 more rows[39m

Create and save plot

ggplot(data = x) +
  geom_point(mapping = aes(x = mpg, y = hp, size = wt, colour = as.factor(am)))

ggsave("plot1.png")

[1m[22mSaving 7 x 5 in image

Session info

Platform

Setting	Value
version	R version 4.4.1 (2024-06-14)
os	Ubuntu 22.04.5 LTS
system	x86_64, linux-gnu
ui	X11
language	en
collate	en_US.UTF-8
ctype	en_US.UTF-8
tz	Etc/UTC
date	2025-06-30
pandoc	2.9.2.1 @ /usr/bin/ (via rmarkdown)
quarto	1.5.57 @ /usr/local/bin/quarto

R Packages

Package	Version	Date (UTC)	Source
callr	3.7.6	2024-03-25	PRISM (R 4.4.1)
cli	3.6.3	2025-04-23	PRISM (R 4.4.1)
digest	0.6.37	2024-08-19	PRISM (R 4.4.1)
dplyr	1.1.4	2023-11-17	PRISM (R 4.4.1)
evaluate	1.0.0	2025-01-10	PRISM (R 4.4.1)
farver	2.1.2	2024-05-13	PRISM (R 4.4.1)
fastmap	1.2.0	2024-05-15	PRISM (R 4.4.1)
generics	0.1.4	2025-05-09	PRISM (R 4.4.1)
ggplot2	3.5.2	2025-04-09	PRISM (R 4.4.1)
glue	1.8.0	2024-09-30	PRISM (R 4.4.1)
gtable	0.3.6	2024-10-25	PRISM (R 4.4.1)
htmltools	0.5.8.1	2024-04-04	PRISM (R 4.4.1)
jsonlite	1.8.9	2025-03-27	PRISM (R 4.4.1)
knitr	1.48	2025-03-16	PRISM (R 4.4.1)
labeling	0.4.3	2023-08-29	PRISM (R 4.4.1)
lattice	0.22-6	2024-03-20	CRAN (R 4.4.1)
lifecycle	1.0.4	2023-11-07	PRISM (R 4.4.1)
magrittr	2.0.3	2022-03-30	PRISM (R 4.4.1)
Matrix	1.7-0	2024-04-26	CRAN (R 4.4.1)
pillar	1.10.2	2025-04-05	PRISM (R 4.4.1)
pkgconfig	2.0.3	2019-09-22	PRISM (R 4.4.1)
png	0.1-8	2022-11-29	PRISM (R 4.4.1)
processx	3.8.6	2025-02-21	PRISM (R 4.4.1)
ps	1.9.1	2025-04-12	PRISM (R 4.4.1)
R6	2.6.1	2025-02-15	PRISM (R 4.4.1)
ragg	1.4.0	2025-04-10	PRISM (R 4.4.1)
RColorBrewer	1.1-3	2022-04-03	PRISM (R 4.4.1)
Rcpp	1.0.14	2025-01-12	PRISM (R 4.4.1)
reticulate	1.42.0	2025-03-25	PRISM (R 4.4.1)
rlang	1.1.4	2025-04-11	PRISM (R 4.4.1)
rmarkdown	2.28	2024-11-04	PRISM (R 4.4.1)
scales	1.4.0	2025-04-24	PRISM (R 4.4.1)
sessioninfo	1.2.3	2025-02-05	PRISM (R 4.4.1)
systemfonts	1.2.3	2025-04-30	PRISM (R 4.4.1)
textshaping	1.0.1	2025-05-01	PRISM (R 4.4.1)
tibble	3.3.0	2025-06-08	PRISM (R 4.4.1)
tidyselect	1.2.1	2024-03-11	PRISM (R 4.4.1)
utf8	1.2.6	2025-06-08	PRISM (R 4.4.1)
vctrs	0.6.5	2023-12-01	PRISM (R 4.4.1)
whirl	0.2.0	2025-06-30	local
withr	3.0.2	2024-10-28	PRISM (R 4.4.1)
xfun	0.48	2025-04-02	PRISM (R 4.4.1)
yaml	2.3.10	2024-07-26	PRISM (R 4.4.1)

Environment variables

Setting	Value
a2ai_ami_ami_build_job_url	https=//github.com/a2_ai_cloud/a2ai_cloud_co<br>re/actions/runs/11558417408
a2ai_ami_AWS_ParallelCluster_Version	3.10.1
a2ai_ami_build_date	20241028163154
a2ai_ami_build_source_ami	<no value>
a2ai_ami_build_source_ami_name	<no value>
a2ai_ami_CI	true
a2ai_ami_environment	development
a2ai_ami_github_commit	ed2de08fee82827a508cca301295abb5b09dde61
a2ai_ami_github_ref	release_v4.0
a2ai_ami_github_repo	a2_ai_cloud/a2ai_cloud_core
a2ai_ami_github_run_id	11558417408
a2ai_ami_github_run_num	1
a2ai_ami_github_workflow	a2_ai_cloud/a2ai_cloud_core/.github/workflow<br>s/ami.yaml@refs/heads/release_v4.0
a2ai_ami_name	a2ai_cloud_release_v4.0_PC_3.10.1_ubuntu_22.<br>04_20241028163154
a2ai_ami_owner	snemir2
a2ai_ami_packer	true
a2ai_ami_packer_cleanup	true
BIBINPUTS	::/cluster-data/user-homes/elizabethb/projec<br>ts/prism-pkgdocs-build/installed-pkgs/whirl_0<br>.2.0/vignettes/articles:/opt/R/4.4.1/lib/R/sh<br>are/texmf/tex/latex
BROWSER	/cluster-data/user-homes/elizabethb/.cursor-<br>server/cli/servers/Stable-5b19bac7a947f54e4ca<br>a3eb7e4c5fbf832389850/server/bin/helpers/brow<br>ser.sh
BSTINPUTS	:/cluster-data/user-homes/elizabethb/project<br>s/prism-pkgdocs-build/installed-pkgs/whirl_0.<br>2.0/vignettes/articles:/opt/R/4.4.1/lib/R/sha<br>re/texmf/bibtex/bst
CALLR_IS_RUNNING	true
COLORTERM	truecolor
CYGWIN	nodosfilewarning
DBUS_SESSION_BUS_ADDRESS	unix:path=/run/user/707801213/bus
DENO_DOM_PLUGIN	/opt/quarto/v1.5.57/bin/tools/x86_64/deno_do<br>m/libplugin.so
DENO_NO_UPDATE_CHECK	1
DENO_TLS_CA_STORE	system,mozilla
EDITOR	vi
GIT_ASKPASS	/cluster-data/user-homes/elizabethb/.cursor-<br>server/cli/servers/Stable-5b19bac7a947f54e4ca<br>a3eb7e4c5fbf832389850/server/extensions/git/d<br>ist/askpass.sh
HOME	/cluster-data/user-homes/elizabethb
HOMEBREW_CELLAR	/home/linuxbrew/.linuxbrew/Cellar
HOMEBREW_PREFIX	/home/linuxbrew/.linuxbrew
HOMEBREW_REPOSITORY	/home/linuxbrew/.linuxbrew/Homebrew
IN_PKGDOWN	true
INFOPATH	/home/linuxbrew/.linuxbrew/share/info:/home/<br>linuxbrew/.linuxbrew/share/info:
LANG	en_US.UTF-8
LANGUAGE	en
LD_LIBRARY_PATH	/opt/R/4.4.1/lib/R/lib:/usr/local/lib:/usr/l<br>ib/x86_64-linux-gnu:/usr/lib/jvm/java-11-open<br>jdk-amd64/lib/server:/opt/R/4.4.1/lib/R/lib:/<br>usr/local/lib:/usr/lib/x86_64-linux-gnu:/usr/<br>lib/jvm/java-11-openjdk-amd64/lib/server:/opt<br>/R/4.4.1/lib/R/lib:/usr/local/lib:/usr/lib/x8<br>6_64-linux-gnu:/usr/lib/jvm/java-11-openjdk-a<br>md64/lib/server:/opt/R/4.4.1/lib/R/lib:/usr/l<br>ocal/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/j<br>vm/java-11-openjdk-amd64/lib/server:/opt/R/4.<br>4.1/lib/R/lib:/usr/local/lib:/usr/lib/x86_64-<br>linux-gnu:/usr/lib/jvm/java-11-openjdk-amd64/<br>lib/server
LESSCLOSE	/usr/bin/lesspipe %s %s
LESSOPEN	\| /usr/bin/lesspipe %s
LN_S	ln -s
LS_COLORS	rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;<br>35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;<br>01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:<br>ow=34;42:st=37;44:ex=01;32:.tar=01;31:.tgz=<br>01;31:.arc=01;31:.arj=01;31:.taz=01;31:.l<br>ha=01;31:.lz4=01;31:.lzh=01;31:.lzma=01;31<br>:.tlz=01;31:.txz=01;31:.tzo=01;31:.t7z=01<br>;31:.zip=01;31:.z=01;31:.dz=01;31:.gz=01;<br>31:.lrz=01;31:.lz=01;31:.lzo=01;31:.xz=01<br>;31:.zst=01;31:.tzst=01;31:.bz2=01;31:.bz<br>=01;31:.tbz=01;31:.tbz2=01;31:.tz=01;31:.<br>deb=01;31:.rpm=01;31:.jar=01;31:.war=01;31<br>:.ear=01;31:.sar=01;31:.rar=01;31:.alz=01<br>;31:.ace=01;31:.zoo=01;31:.cpio=01;31:.7z<br>=01;31:.rz=01;31:.cab=01;31:.wim=01;31:.s<br>wm=01;31:.dwm=01;31:.esd=01;31:.jpg=01;35:<br>.jpeg=01;35:.mjpg=01;35:.mjpeg=01;35:.gif<br>=01;35:.bmp=01;35:.pbm=01;35:.pgm=01;35:.<br>ppm=01;35:.tga=01;35:.xbm=01;35:.xpm=01;35<br>:.tif=01;35:.tiff=01;35:.png=01;35:.svg=0<br>1;35:.svgz=01;35:.mng=01;35:.pcx=01;35:.m<br>ov=01;35:.mpg=01;35:.mpeg=01;35:.m2v=01;35<br>:.mkv=01;35:.webm=01;35:.webp=01;35:.ogm=<br>01;35:.mp4=01;35:.m4v=01;35:.mp4v=01;35:.<br>vob=01;35:.qt=01;35:.nuv=01;35:.wmv=01;35:<br>.asf=01;35:.rm=01;35:.rmvb=01;35:.flc=01;<br>35:.avi=01;35:.fli=01;35:.flv=01;35:.gl=0<br>1;35:.dl=01;35:.xcf=01;35:.xwd=01;35:.yuv<br>=01;35:.cgm=01;35:.emf=01;35:.ogv=01;35:.<br>ogx=01;35:.aac=00;36:.au=00;36:.flac=00;36<br>:.m4a=00;36:.mid=00;36:.midi=00;36:.mka=0<br>0;36:.mp3=00;36:.mpc=00;36:.ogg=00;36:.ra<br>=00;36:.wav=00;36:.oga=00;36:.opus=00;36:<br>.spx=00;36:.xspf=00;36:
MAKE	make
MANPATH	:/opt/slurm/share/man:/opt/slurm/share/man
map_migrated	mig8KP4B19EMB
OLDPWD	/cluster-data/user-homes/elizabethb/.cursor-<br>server
PAGER	/usr/bin/pager
PATH	/home/linuxbrew/.linuxbrew/bin:/home/linuxbr<br>ew/.linuxbrew/sbin:/cluster-data/user-homes/e<br>lizabethb/.cargo/bin:/cluster-data/user-homes<br>/elizabethb/.cursor-server/cli/servers/Stable<br>-5b19bac7a947f54e4caa3eb7e4c5fbf832389850/ser<br>ver/bin/remote-cli:/cluster-data/user-homes/e<br>lizabethb/.local/bin:/home/linuxbrew/.linuxbr<br>ew/bin:/home/linuxbrew/.linuxbrew/sbin:/clust<br>er-data/user-homes/elizabethb/.cargo/bin:/usr<br>/local/texlive/2024/bin/x86_64-linux:/opt/pyt<br>hon/3.12.4/bin:/opt/PsN/5.4.0/bin:/opt/julia/<br>1.10.4/bin:/usr/local/go/bin:/cluster-data/us<br>er-homes/elizabethb/.cargo/bin:/cluster-data/<br>user-homes/elizabethb/.local/bin:/usr/local/t<br>exlive/2024/bin/x86_64-linux:/opt/python/3.12<br>.4/bin:/opt/PsN/5.4.0/bin:/opt/julia/1.10.4/b<br>in:/usr/local/go/bin:/usr/local/sbin:/usr/loc<br>al/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/gam<br>es:/usr/local/games:/snap/bin:/opt/aws/bin:/o<br>pt/parallelcluster/pyenv/versions/3.9.19/envs<br>/awsbatch_virtualenv/bin:/opt/slurm/bin:/opt/<br>parallelcluster/pyenv/versions/3.9.19/envs/aw<br>sbatch_virtualenv/bin:/opt/slurm/bin
PROCESSX_PSc579b6a9183c6_1751312560	YES
PROCESSX_PSc5aa2633946ce_1751312566	YES
PROCESSX_PSc5cd0441c27bb_1751312568	YES
PROCESSX_PSc5dfc2d3026d3_1751312569	YES
PWD	/tmp/RtmpjLQZ6D/filec5cd02049e422
QUARTO_BIN_PATH	/opt/quarto/v1.5.57/bin
QUARTO_DENO	/opt/quarto/v1.5.57/bin/tools/x86_64/deno
QUARTO_DOCUMENT_PATH	/tmp/RtmpjLQZ6D/filec5cd02049e422
QUARTO_PROFILE
QUARTO_PROJECT_DIR	/tmp/RtmpjLQZ6D/filec5cd02049e422
QUARTO_PROJECT_ROOT	/tmp/RtmpjLQZ6D/filec5cd02049e422
QUARTO_ROOT	/opt
QUARTO_SHARE_PATH	/opt/quarto/v1.5.57/share
R_ARCH
R_BROWSER	false
R_BZIPCMD	/usr/bin/bzip2
R_CLI_NUM_COLORS	256
R_DOC_DIR	/opt/R/4.4.1/lib/R/doc
R_GZIPCMD	/usr/bin/gzip
R_HOME	/opt/R/4.4.1/lib/R
R_INCLUDE_DIR	/opt/R/4.4.1/lib/R/include
R_LIBS_SITE	/opt/R/4.4.1/lib/R/site-library
R_LIBS_USER	/cluster-data/user-homes/elizabethb/R/x86_64<br>-pc-linux-gnu-library/4.4
R_PAPERSIZE	letter
R_PAPERSIZE_USER	letter
R_PDFVIEWER	false
R_PLATFORM	x86_64-pc-linux-gnu
R_PRINTCMD	/usr/bin/lpr
R_RD4PDF	times,inconsolata,hyper
R_SESSION_TMPDIR	/tmp/RtmpBxbvDk
R_SHARE_DIR	/opt/R/4.4.1/lib/R/share
R_STRIP_SHARED_LIB	strip --strip-unneeded
R_STRIP_STATIC_LIB	strip --strip-debug
R_TESTS
R_TEXI2DVICMD	/usr/bin/texi2dvi
R_UNZIPCMD	/usr/bin/unzip
R_ZIPCMD	/usr/bin/zip
RV_NUM_CPUS	6
SED	/usr/bin/sed
SHELL	/bin/bash
SHLVL	4
SSH_CLIENT	100.122.64.113 61545 22
SSH_CONNECTION	100.122.64.113 61545 100.103.37.46 22
SSL_CERT_DIR	/usr/lib/ssl/certs
SSL_CERT_FILE	/usr/lib/ssl/certs/ca-certificates.crt
TAR	/usr/bin/tar
TERM	dumb
TERM_PROGRAM	vscode
TERM_PROGRAM_VERSION	1.1.6
TEXINPUTS	:/cluster-data/user-homes/elizabethb/project<br>s/prism-pkgdocs-build/installed-pkgs/whirl_0.<br>2.0/vignettes/articles:/opt/R/4.4.1/lib/R/sha<br>re/texmf/tex/latex
USER	elizabethb
VSCODE_GIT_ASKPASS_EXTRA_ARGS
VSCODE_GIT_ASKPASS_MAIN	/cluster-data/user-homes/elizabethb/.cursor-<br>server/cli/servers/Stable-5b19bac7a947f54e4ca<br>a3eb7e4c5fbf832389850/server/extensions/git/d<br>ist/askpass-main.js
VSCODE_GIT_ASKPASS_NODE	/cluster-data/user-homes/elizabethb/.cursor-<br>server/cli/servers/Stable-5b19bac7a947f54e4ca<br>a3eb7e4c5fbf832389850/server/node
VSCODE_GIT_IPC_HANDLE	/tmp/vscode-git-ed2606fd1e.sock
VSCODE_IPC_HOOK_CLI	/tmp/vscode-ipc-81f97b47-b14d-4021-b006-5c8e<br>f76417f2.sock
WHIRL_LOG_MSG	/tmp/RtmpjLQZ6D/filec5cd02049e422/log_msg.js<br>on
XDG_DATA_DIRS	/usr/share/gnome:/usr/local/share:/usr/share<br>:/var/lib/snapd/desktop

Option settings

Setting	Value
add.smooth	TRUE
ambiguousMethodSelection	function (cond) , NULL
bitmapType	cairo
browser	false
browserNLdisabled	FALSE
callr.condition_handler_cli_message	function (msg) , {, custom_handler <- getOption("cli.default_handler"), if (is.function(custom_handler)) {, custom_handler(msg), }, else {, cli_server_default(msg), }, }
catch.script.errors	FALSE
CBoundsCheck	FALSE
check.bounds	FALSE
citation.bibtex.max	1
continue	+
contrasts.unordered	contr.treatment
contrasts.ordered	contr.poly
defaultPackages1	datasets
defaultPackages2	utils
defaultPackages3	grDevices
defaultPackages4	graphics
defaultPackages5	stats
defaultPackages6	methods
demo.ask	default
deparse.cutoff	60
device	function (width = 7, height = 7, ...) , {, grDevices::pdf(NULL, width, height, ...), }
device.ask.default	FALSE
digits	7
dplyr.show_progress	TRUE
dvipscmd	dvips
echo	FALSE
editor	vi
encoding	native.enc
example.ask	default
expressions	5000
help.search.types1	vignette
help.search.types2	demo
help.search.types3	help
help.try.all.packages	FALSE
htmltools.preserve.raw	TRUE
HTTPUserAgent	R/4.4.1 (ubuntu-22.04) R (4.4.1 x86_64-pc-linux-gnu x86_64 linux-gnu)
internet.info	2
keep.parse.data	TRUE
keep.parse.data.pkgs	FALSE
keep.source	FALSE
keep.source.pkgs	FALSE
knitr.in.progress	TRUE
locatorBell	TRUE
mailer	mailto
matprod	default
max.contour.segments	25000
max.print	99999
menu.graphics	TRUE
na.action	na.omit
nwarnings	50
OutDec	.
pager	/opt/R/4.4.1/lib/R/bin/pager
papersize	letter
PCRE_limit_recursion	NA
PCRE_study	FALSE
PCRE_use_JIT	TRUE
pdfviewer	false
pkg.sysreqs	FALSE
pkgType	source
printcmd	/usr/bin/lpr
prompt	>
repos.RSPM	https://packagemanager.posit.co/cran/__linux__/jammy/2024-10-06
repos.gh.pkg.mirror	https://a2-ai.github.io/gh-pkg-mirror/2024-10-06
scipen	0
show.coef.Pvalues	TRUE
show.error.messages	TRUE
show.signif.stars	TRUE
showErrorCalls	TRUE
showNCalls	50
showWarnCalls	FALSE
str.strict.width	no
str.digits.d	3
str.vec.len	4
str.list.len	99
str.drop.deparse.attr	TRUE
str.formatNum	function (x, ...) , format(x, trim = TRUE, drop0trailing = TRUE, ...)
str.dendrogram.last	`
texi2dvi	/usr/bin/texi2dvi
tikzMetricsDictionary	dummy-tikzDictionary
timeout	60
try.outFile	3
ts.eps	1e-05
ts.S.compat	FALSE
unzip	/usr/bin/unzip
useFancyQuotes	FALSE
verbose	FALSE
warn	0
warning.length	1000
warnPartialMatchArgs	FALSE
warnPartialMatchAttr	FALSE
warnPartialMatchDollar	FALSE
width	80