Package index • nlmixr2est

All functions
`addCwres()`	Add CWRES
`addNpde()`	NPDE calculation for nlmixr2
`addTable()`	Add table information to nlmixr2 fit object without tables
`assertNlmixrFit()`	Assert that this is a nlmixr2 fit object
`assertNlmixrFitData()`	Assert that this is a nlmixr2 fit data object
`bobyqaControl()`	Control for bobyqa estimation method in nlmixr2
`boxCox()` `iBoxCox()` `yeoJohnson()` `iYeoJohnson()`	Cox Box, Yeo Johnson and inverse transformation
`cholSE()`	Generalized Cholesky Matrix Decomposition
`.augPredIpredModel()`	Augment Prediction for Ipred Model
`.nlmixrPreprocessLiteralFix()`	This literally fixes parameters in the model
`.preProcessDataUi()`	Preprocess the zero omegas
`.preProcessZeroOmega()`	Preprocess the zero omegas
`foceiControl()`	Control Options for FOCEi
`getValidNlmixrControl()` `getValidNlmixrCtl()`	Get valid nlmixr control object
`lbfgsb3cControl()`	Control for lbfgsb3c estimation method in nlmixr2
`n1qn1Control()`	Control for n1qn1 estimation method in nlmixr2
`newuoaControl()`	Control for newuoa estimation method in nlmixr2
`nlmControl()`	nlmixr2 defaults controls for nlm
`nlminbControl()`	nlmixr2 nlminb defaults
`nlmixr2()` `nlmixr()`	nlmixr2 fits population PK and PKPD non-linear mixed effects models.
`nlmixr2AllEst()`	Show all the current estimation methods
`nlmixr2AugPredSolve()` `augPred(<nlmixr2FitData>)`	Augmented Prediction for nlmixr2 fit
`nlmixr2CreateOutputFromUi()`	Create nlmixr output from the UI
`nlmixr2Est()`	Generic for nlmixr2 estimation methods
`nlmixr2Gill83()`	Get the optimal forward difference interval by Gill83 method
`nlmixr2Hess()`	Calculate Hessian
`nlmixr2Keywords`	A list and description of the fields in the nlmxir2 object
`nlmixr2Logo()`	Messages the nlmixr2 logo...
`nlmixr2NlmeControl()` `nlmeControl()`	Control Values for nlme Fit with extra options for nlmixr
`nlmixr2Validate()` `nmTest()`	Validate nlmixr2
`nlmixr2Version()`	Display nlmixr2's version
`nlmixrAddObjectiveFunctionDataFrame()`	Add objective function data frame to the current objective function
`nlmixrAddTiming()`	Manually add time to a nlmixr2 object
`nlmixrCbind()`	nlmixrCbind
`nlmixrClone()`	Clone nlmixr environment
`nlmixrWithTiming()`	Time a part of a nlmixr operation and add to nlmixr object
`nlsControl()`	nlmixr2 defaults controls for nls
`nmNearPD()`	C++ implementation of Matrix's nearPD
`nmObjGetControl()`	Get control object from fit
`nmObjGetEstimationModel()`	Get the estimation model for a fit object depending on the object type
`nmObjGetFoceiControl()`	Method for getting focei compatible control object from nlmixr object
`nmObjGetIpredModel()` `nmObjGetEstimationModel(<saem>)` `nmObjGetEstimationModel(<default>)`	Get the ipred model for a fit object depending on the object type
`nmObjGetPredOnly()`	Get the pred-only model for a fit depending on the object type
`nmObjHandleControlObject()`	Handle the control object
`nmObjHandleModelObject()`	Handle Model Object
`nmObjUiSetCompressed()`	Set if the nlmixr2 object will return a compressed ui
`nmsimplex()`	Nelder-Mead simplex search
`ofv()`	Return the objective function
`optimControl()`	nlmixr2 optim defaults
`print(<saemFit>)`	Print an SAEM model fit summary
`residuals(<nlmixr2FitData>)`	Extract residuals from the FOCEI fit
`saemControl()`	Control Options for SAEM
`setCov()`	Set the covariance type based on prior calculated covariances
`setOfv()` `getOfvType()`	Set/get Objective function type for a nlmixr2 object
`sqrtm()`	Return the square root of general square matrix A
`summary(<saemFit>)`	Print an SAEM model fit summary
`tableControl()`	Output table/data.frame options
`uobyqaControl()`	Control for uobyqa estimation method in nlmixr2
`vpcSim()`	VPC simulation

Reference

All functions