Package index • teal.modules.clinical

Tables
`teal.modules.clinical` `teal.modules.clinical-package`	`teal` Modules for Standard Clinical Outputs
`tm_t_abnormality()`	teal Module: Abnormality Summary Table
`tm_t_abnormality_by_worst_grade()`	teal Module: Laboratory test results with highest grade post-baseline
`tm_t_ancova()`	teal Module: ANCOVA Summary
`tm_t_binary_outcome()`	teal Module: Binary Outcome Table
`tm_t_coxreg()`	teal Module: Cox Regression Model
`tm_t_events()`	teal Module: Events by Term
`tm_t_events_by_grade()`	teal Module: Events by Grade
`tm_t_events_patyear()`	teal Module: Event Rates Adjusted for Patient-Years
`tm_t_events_summary()`	teal Module: Adverse Events Summary
`tm_t_exposure()`	teal Module: Exposure Table for Risk management plan
`tm_t_glm_counts()`	Teal Module: Regression Counts Summary
`tm_t_logistic()`	teal Module: Logistic Regression
`tm_t_mult_events()`	teal Module: Multiple Events by Term
`tm_t_pp_basic_info()`	teal Module: Patient Profile Basic Info
`tm_t_pp_laboratory()`	teal Module: Patient Profile Laboratory Table
`tm_t_pp_medical_history()`	teal Module: Patient Profile Medical History
`tm_t_pp_prior_medication()`	teal Module: Patient Profile Prior Medication
`tm_t_shift_by_arm()`	teal Module: Shift by Arm
`tm_t_shift_by_arm_by_worst()`	teal Module: Shift by Arm by Worst Analysis Indicator Level
`tm_t_shift_by_grade()`	teal Module: Grade Summary Table
`tm_t_smq()`	teal Module: Adverse Events Table by Standardized MedDRA Query
`tm_t_summary()`	teal Module: Summary of Variables
`tm_t_summary_by()`	teal Module: Summarize Variables by Row Groups
`tm_t_tte()`	teal Module: Time-To-Event Table
Graphs
`tm_g_barchart_simple()`	teal Module: Simple Bar Chart and Table of Counts per Category
`tm_g_ci()`	teal Module: Confidence Interval Plot
`tm_g_forest_rsp()`	teal Module: Forest Response Plot
`tm_g_forest_tte()`	teal Module: Forest Survival Plot
`tm_g_ipp()`	teal Module: Individual Patient Plots
`tm_g_km()`	teal Module: Kaplan-Meier Plot
`tm_g_lineplot()`	teal Module: Line Plot
`tm_g_pp_adverse_events()`	teal Module: Patient Profile Adverse Events Table and Plot
`tm_g_pp_patient_timeline()`	teal Module: Patient Profile Timeline Plot
`tm_g_pp_therapy()`	teal Module: Patient Profile Therapy Table and Plot
`tm_g_pp_vitals()`	teal Module: Patient Profile Vitals Plot
General analyses
`tm_a_gee()`	teal Module: Generalized Estimating Equations (GEE) analysis
`tm_a_mmrm()`	teal Module: Mixed Model Repeated Measurements (MMRM) Analysis
Patient profile modules
`tm_g_pp_adverse_events()`	teal Module: Patient Profile Adverse Events Table and Plot
`tm_g_pp_patient_timeline()`	teal Module: Patient Profile Timeline Plot
`tm_g_pp_therapy()`	teal Module: Patient Profile Therapy Table and Plot
`tm_g_pp_vitals()`	teal Module: Patient Profile Vitals Plot
`tm_t_pp_basic_info()`	teal Module: Patient Profile Basic Info
`tm_t_pp_laboratory()`	teal Module: Patient Profile Laboratory Table
`tm_t_pp_medical_history()`	teal Module: Patient Profile Medical History
`tm_t_pp_prior_medication()`	teal Module: Patient Profile Prior Medication
Helper functions
`add_expr()`	Expression List
`as_num()`	Parse text input to numeric vector
`bracket_expr()`	Expressions in Brackets
`call_concatenate()`	Concatenate expressions via a binary operator
`clean_description()`	Clean up categorical variable description
`color_lab_values()`	Mapping function for Laboratory Table
`column_annotation_label()`	Get full label, useful for annotating plots
`cs_to_des_filter()`	Convert choices_selected to data_extract_spec with only filter_spec
`cs_to_des_select()`	Convert choices_selected to data_extract_spec with only select_spec
`cs_to_filter_spec()`	Convert choices_selected to filter_spec
`cs_to_select_spec()`	Convert choices_selected to select_spec
`default_total_label()` `set_default_total_label()`	Default string for total column label
`extract_input()`	Extracts html id for `data_extract_ui`
`get_var_labels()`	Get variable labels
`h_concat_expr()`	Expression Deparsing
`is.cs_or_des()`	Whether object is of class `teal.transform::choices_selected()`
`pipe_expr()`	Expressions as a Pipeline
`prepare_arm()`	Expression: Arm Preparation
`prepare_arm_levels()`	Expression: Prepare Arm Levels
`split_choices()`	Split `choices_selected` objects with interactions into their component variables
`split_col_expr()`	Split-Column Expression
`split_interactions()`	Split interaction terms into their component variables
Data Data included in the package.
`tmc_ex_adsl` `tmc_ex_adae` `tmc_ex_adaette` `tmc_ex_adcm` `tmc_ex_adeg` `tmc_ex_adex` `tmc_ex_adlb` `tmc_ex_admh` `tmc_ex_adqs` `tmc_ex_adrs` `tmc_ex_adtte` `tmc_ex_advs`	Simulated `CDISC` Data for Examples

Reference

Tables

Graphs

General analyses

Patient profile modules

Helper functions

Data