Package index • pmplots

All functions

add_density() layer_dnorm(): Add a density curve to a plot
as.list(<pm_opts>): Coerce pm_opts object to a list
boxwork(): Make boxplots
`$<-`(<pm_opts>): Assign a pmplots option
col_label(): Column // axis-label specification
cont_cat_panel() cont_cat_panel_list(): Create a display of continuous versus categorical covariates
cont_hist() cont_hist_list() pm_histogram(): Generate a histogram plot
cwres_covariate() cwres_covariate_list(): Create CWRES versus covariate displays
cwres_panel() cwres_panel_list(): Create a display of CWRES diagnostic plots
cwres_time() cwres_tafd() cwres_tad() cwresi_time() cwresi_tafd() cwresi_tad(): Plot conditional weighted residuals versus time
defcx(): Default setting for discrete x-axis scale
defx(): Default setting for x-axis scale
defy(): Default setting for continuous y-axis scale
dv_pred() dv_ipred() dv_preds(): Plot DV versus predicted values
dv_pred_ipred() dv_pred_ipred_impl() do_dv_pred_ipred(): Create plots showing DV, PRED, and IPRED by individual
dv_time() dv_tafd() dv_tad(): Plot DV versus time
eta_cat(): Plot ETAs versus categorical variables
eta_cont(): Plot ETAs versus continuous variables
eta_covariate() eta_covariate_list(): Create ETA versus covariate displays
eta_hist(): ETA histograms
eta_labs() eta_col_labs(): Make ETA labels and col-labels
geom_3s() layer_3s(): Additional reference lines
layer_h() layer_s() layer_a() layer_hs() layer_sh() layer_as() layer_sa() layer_dots() gs() ga() gh(): Layer functions
list_plot_x() list_plot_y() list_plot_xy() list_plot_yx(): Apply a plotting function to a vector of x or y values
log_scale(): Scale information for log transformation
logbr() logbr3(): Create breaks on log scale
npde_covariate() npde_covariate_list(): Create NPDE versus covariate displays
npde_panel() npde_panel_list(): Create a display of NPDE diagnostic plots
npde_ref(): Input parameters for NPDE reference lines
npde_scatter() cwres_scatter(): Create a display of residuals versus time and predicted values
npde_time() npde_tad() npde_tafd(): Plot NPDE versus time
pairs_plot() eta_pairs(): Pairs plots using ggpairs
parse_label() look_for_tex() label_tex() label_parse_label(): Parse the label part of a col_label
pm_aliases() pm_set_aliases() pm_clear_aliases() pm_show_canonical(): Set and manage aliases to certain canonical names used by pmplots
pm_axis() pm_axis_data: Get defaults for plot axes
pm_axis_tad() pm_axis_time() pm_axis_tafd() pm_axis_res() pm_axis_wres() pm_axis_cwres() pm_axis_cwresi() pm_axis_npde() pm_axis_pred() pm_axis_ipred() pm_axis_dv() pm_col_tad() pm_col_id(): Functions to generate axis data and other standard column names.
pm_box() pm_box_list() cont_cat(): Plot continuous variable against a categorical variable
pm_browser() pm_browser_show(): pmplots browser object
pm_gadget(): pmplots browser gadget
pm_gg_break() pm_gg_break_aes(): Break aesthetic labels across two lines
pm_gg_labs(): Label ggplot aesthetics from a yspec object or other source
pm_grid(): Arrange a list of plots in a grid
pm_label_break(): Labeller to break a facet label into two lines
pm_label_columns(): Add axis label data to a data frame
pm_label_rm(): Remove pmplot-specific axis label information
pm_log() pm_ident(): Identity and log scale helpers
pm_options() pm_opts pm: Set global plot options
pm_relabel(): Relabel a plot using a yspec object or named list
pm_scatter() pm_scatter_list() cont_cont(): Plot continuous variable versus continuous variable
pm_smooths(): Add loess line
pm_theme() pm_abline() pm_smooth() pm_hline(): The standard pmplots theme
pm_with(): Arrange a named list of plots
pmp_gg_labs(): Label pmplot aesthetics from a yspec object or named list
pmp_relabel(): Relabel a pmplots plot using a yspec object or named list
pmp_relabel_pairs(): Relabel facets in a pmplots pairs plot
pmp_relabel_wrap(): Relabel facet strips in a wrapped pmplot
pmplots: Plots for pharmacometrics
pmplots_data() pmplots_data_id() pmplots_data_obs(): Example data sets
print(<pm_opts>): Print the pm_opts object
relabel_at(): Relabel plots in a list using pm_relabel
res_cat() wres_cat() cwres_cat() cwresi_cat() npde_cat(): Plot residuals versus categorical variable
res_cont() wres_cont() cwres_cont() cwresi_cont() npde_cont(): Plot residuals versus continuous variables
res_hist() wres_hist() cwres_hist() cwresi_hist() npde_hist(): Histograms of residuals or NPDE
npde_hist_q() cwres_hist_q(): Create a display of residual histograms and quantile-quantile plots
res_pred() wres_pred() cwres_pred() cwresi_pred() npde_pred(): Residuals or NPDE versus predicted values
wres_q() cwres_q() cwresi_q() npde_q(): QQ plot for conditional residuals or NPDE
res_time() res_tafd() res_tad(): Plot residuals versus time
rot_at(): Rotate axis tick marks in a list of plots
rot_x() rot_y(): Rotate axis text
rot_xy(): Rotate the x or y axes for gg or patchwork objects
scatt(): Scatter plot function
split_plot(): Split and plot
`[`(<pm_opts>): Extract multiple pmplots options
supplement_cwres(): Add CWRES column from CWRESI if needed
theme_plain(): A plain ggplot2 theme
with(<pm_display>): with method for pm_display objects
wrap_cont_cont() wrap_cont_time() wrap_res_time() wrap_eta_cont() wrap_hist() wrap_dv_preds() wrap_cont_cat(): Faceted plots
wres_time() wres_tafd() wres_tad(): Plot weighted residuals versus time
y_time(): Plot continuous data versus time